Bibliotheca


Reference Materials

 

 
Washington Department of Health Public Health Laboratories (*.pdf format)
Common water quality data reporting and recording Field Forms Index (in use by SnoKing Watershed Council and other organizations) as a downloadable *.zip file.


Stroud Water Research Center Macroinvertebrate Photo Gallery

NIH PubChem "Explore Chemistry: Quickly find chemical information from authoritative sources"
 
SKWC SnoKing Watershed Council's YouTube Channel
 

Reading List  
 
Recently published news and journal articles of interest 
 
An D., Yu D., Zheng X., Zhou Y., Meng L., Xing Q. (2021). Monitoring the dissipation of the floating green macroalgae blooms in the yellow sea, (2007-2020) on the basis of satellite remote sensing. Remote Sensing. 13, 3811. doi: 10.3390/rs13193811
 
Lowe, M.; Qin, R.; Mao, X. A Review on Machine Learning, Artificial Intelligence, and Smart Technology in Water Treatment and Monitoring. Water 2022, 14, 1384. https://doi.org/10.3390/w14091384.
 
Parry, Victor (2023). Drivers of zooplankton dispersal in a pond metacommunity [Dataset]. Dryad. https://doi.org/10.5061/dryad.h70rxwdmt

"Wastewater sequencing flushes out vital health data: Advances in metagenomics are making wastewater monitoring a powerful tool to help forecast and prevent disease outbreaks." NatureResearch/Zymo Research, 2024.

Adjovu, G.E.; Stephen, H.; James, D.; Ahmad, S. Measurement of Total Dissolved Solids and Total Suspended Solids in Water Systems: A Review of the Issues, Conventional, and Remote Sensing Techniques. Remote Sens. 2023, 15, 3534. https://doi.org/10.3390/rs15143534

Adjovu, G.E.; Stephen, H.; James, D.; Ahmad, S. Overview of the Application of Remote Sensing in Effective Monitoring of Water Quality Parameters. Remote Sens. 2023, 15, 1938. https://doi.org/10.3390/rs15071938
 
Jonker, M.T.O. and Jones, A.J. (2024), Recent Developments in Sediment Toxicity Testing. Environ Toxicol Chem. https://doi.org/10.1002/etc.5942
 
Zhenyu Tian, David A. Wark, Kevin Bogue, C. Andrew James. "Suspect and non-target screening of contaminants of emerging concern in streams in agricultural watersheds." Science of the Total Environment, v795, 15 November 2021  https://doi.org/10.1016/j.scitotenv.2021.148826

Adjovu, G.E.; Stephen, H.; James, D.; Ahmad, S. Overview of the Application of Remote Sensing in Effective Monitoring of Water Quality Parameters. Remote Sens. 2023, 15, 1938. https://doi.org/10.3390/rs15071938

Heck, M.P., Schultz, L.D., Hockman-Wert, D., Dinger, E.C., and Dunham, J.B., 2018, Monitoring stream temperatures - A guide for non-specialists: U.S. Geological Survey Techniques and Methods, book 3, chap. A25, 76 p., https://doi.org/10.3133/tm3A25

Angelakis, A.N.; Capodaglio, A.G.; Dialynas, E.G. Wastewater Management: From Ancient Greece to Modern Times and Future. Water 2023, 15, 43. https://doi.org/10.3390/w15010043

Viant et. al. "Utilizing Omics Data for Chemical Grouping". Environmental Tocology and Chemistry, 8 August 2024. https://doi.org/10.1002/etc.5959
 

Bosshart, Lou. "New UBC water treatment zaps ‘forever chemicals’ for good: Engineers at the University of British Columbia have developed a new water treatment that removes “forever chemicals” from drinking water safely, efficiently – and for good. University of British Columbia News, 22 March 2023.

Wang, Wenqi and Emamjomehzadeh, Omid and Leitão, João P. and Juma, Benard and Wang, Zongzhi and Guan, Mingfu and Saksena, Siddharth and Zarei, Seyedamirhossein and Wani, Omar, Next-Generation Stormwater Infrastructures: A Typology of the Paradigm Shifts for Design and Operation. Available at SSRN: https://ssrn.com/abstract=5153608 or http://dx.doi.org/10.2139/ssrn.5153608.

Smahajcsik D, Roager L, Strube ML, Zhang S, Gram L.0.Stronger together: harnessing natural algal communities as potential probiotics for inhibition of aquaculture pathogens. Microbiol Spectr0:e00421-25.  https://doi.org/10.1128/spectrum.00421-25

Lan, J.; Liu, P.; Hu, X.; Zhu, S. Harmful Algal Blooms in Eutrophic Marine Environments: Causes, Monitoring, and Treatment. Water 2024, 16, 2525. https://doi.org/10.3390/w16172525

Sun, Y.; Yuan, B.; Li, Z.; Liu, Y.; Zhao, D. Rethinking Underwater Crab Detection via Defogging and Channel Compensation. Fishes 2024, 9, 60. https://doi.org/10.3390/fishes9020060 

Wei, Y.; Ma, A.; Deng, Y.; Cao, M.; Hu, Y.; Cheng, Z.; Zhu, L. Effects of Flow Turbulence on the Entire Development Process of Drifting Fish Eggs. Fishes 2024, 9, 88. https://doi.org/10.3390/fishes9030088 

Magel CL, Nugraha A, Sutherland DA, Helms AR, Niessner J and Khangaonkar T (2025) Biophysical model of eelgrass and water quality in Coos Bay, OR shows greater mitigation potential for ocean acidification than hypoxia. Front. Mar. Sci. 12:1585621. doi: 10.3389/fmars.2025.1585621

Wang, L.; Long, X.; Li, Y.; Zhang, Y.; Sun, W.; Wu, X. Effects of Three Sources of Astaxanthin on the Growth, Coloration, and Antioxidant Capacity of Rainbow Trout (Oncorhynchus mykiss) during Long-Term Feeding. Fishes 2024, 9, 174. https://doi.org/10.3390/fishes9050174  

Sumaila UR and Villasante S (2025) Surging blue economy, increasing conflict risks and mitigation strategies. Front. Mar. Sci. 12:1499386. doi: 10.3389/fmars.2025.1499386 

Vijayaram, S.; Ringø, E.; Ghafarifarsani, H.; Hoseinifar, S.H.; Ahani, S.; Chou, C.-C. Use of Algae in Aquaculture: A Review. Fishes 2024, 9, 63. https://doi.org/10.3390/fishes9020063  

Greene CM, Beamer EM, Munsch SH, Chamberlin JW, LeMoine MT and Anderson JH (2025) Population responses of Chinook salmon to two decades of restoration of estuary nursery habitat. Front. Mar. Sci. 12:1584913. doi: 10.3389/fmars.2025.1584913 

Sun, H.; Zhou, Y.; Jiang, C. Regulating Denitrification in Constructed Wetlands: The Synergistic Role of Radial Oxygen Loss and Root Exudates. Water 2024, 16, 3706. https://doi.org/10.3390/w16243706 

Chau, T.V.; Jung, S.; Kim, M.; Na, W.-B. Analysis of the Bending Height of Flexible Marine Vegetation. J. Mar. Sci. Eng. 2024, 12, 1054. https://doi.org/10.3390/jmse12071054 

Prarthana Shankar, Ellie M. Dalsky, Joanne E. Salzer, Rachael F. Lane, Sophie Hammond, William N. Batts, Jacob L. Gregg, Justin B. Greer, Gael Kurath, Paul K. Hershberger, John D. Hansen (2025) Evaluation of 6PPD-Quinone Lethal Toxicity and Sublethal Effects on Disease Resistance and Swimming Performance in Coastal Cutthroat Trout (Oncorhynchus clarkii clarkii) Environ. Sci. Technol. 2025, 59, 23, 11505–11514. https://doi.org/10.1021/acs.est.5c03697 

Rigas, S.; Tzouveli, P.; Kollias, S. An End-to-End Deep Learning Framework for Fault Detection in Marine Machinery. Sensors 2024, 24, 5310. https://doi.org/10.3390/s24165310 

S.A. Lévy, M. Thomas, F. Pétronin, M. Lecomte, J.M. Mortillaro, D. Carval, T. Lecocq. Predish: a decision support tool for estimating risk of fish predation in aquaculture systems. Aquaculture, Volume 609, 15 October 2025, 742833 https://doi.org/10.1016/j.aquaculture.2025.742833

Dube, E.; Okuthe, G.E. Applications of Antimicrobial Photodynamic Therapy in Aquaculture: Effect on Fish Pathogenic Bacteria. Fishes 2024, 9, 99. https://doi.org/10.3390/fishes9030099 

Thierry V, Claustre H, Pasqueron de Fommervault O, Zilberman N, Johnson KS, King BA, Wijffels SE, Bhaskar UTVS, Balmaseda MA, Belbeoch M, Bollard M, Boutin J, Boyd P, Cancouët R, Chai F, Ciavatta S, Crane R, Cravatte S, Dall’Olmo G, Desbruyères D, Durack PJ, Fassbender AJ, Fennel K, Fujii Y, Gasparin F, González-Santana A, Gourcuff C, Gray A, Hewitt HT, Jayne SR, Johnson GC, Kolodziejczyk N, Le Boyer A, Le Traon P-Y, Llovel W, Lozier MS, Lyman JM, McDonagh EL, Martin AP, Meyssignac B, Mogensen KS, Morris T, Oke PR, Smith WO Jr, Owens B, Poffa N, Post J, Roemmich D, Rykaczewski RR, Sathyendranath S, Scanderbeg M, Scheurle C, Schofield O, von Schuckmann K, Scourse J, Sprintall J, Suga T, Tonani M, van Wijk E, Xing X and Zuo H (2025) Advancing ocean monitoring and knowledge for societal benefit: the urgency to expand Argo to OneArgo by 2030. Front. Mar. Sci. 12:1593904. doi: 10.3389/fmars.2025.1593904

Gu Y (2025) Bandwagon effect, free-rider effect, tragedy of the commons: collaborative governance of marine pollution. Front. Mar. Sci. 12:1549424. doi: 10.3389/fmars.2025.1549424

Lujan, Milthon. "RNA viruses in aquaculture: biosecurity and new vaccines." AquaHoy, 3 June 2025. ( https://aquahoy.com/rna-viruses-in-aquaculture-biosecurity-new-vaccines/ )

Held, Lisa. The Continued Fight Over Farming the Oceans: Recent efforts to open up federal waters to marine finfish aquaculture are viewed as either an environmental imperative as the climate changes, or a potential industrial disaster. CivilEats, 9 November 2020. ( https://civileats.com/2020/11/09/the-continued-fight-over-farming-the-oceans/ )

"Fisheries disrupt balance of marine nutrients in countries' Exclusive Economic Zones." UBC/Sea Around Us, 10 April 2025.

Lujan, Milthon. "Astaxanthin in shrimp: Dosage, benefits, and production for successful aquaculture." AquaHoy, 5 June 2025.

Lujan, Milthon. "Clams for vibriosis biocontrol in red tilapia fish farming." AquaHoy, 2 June 2025.

Mascorda-Cabré, Llúcia. "Mussel power: how an offshore shellfish farm is boosting marine life." The Conversation, 6 June 2025.

Mostow, R. S., F. Barreto, R. Biel, E. Meyer, and S. D. Hacker. 2021. Discovery of a dune-building hybrid beachgrass (Ammophila arenaria × A. breviligulata) in the U.S. Pacific Northwest. Ecosphere 12(3):e03501. 10.1002/ecs2.3501  https://doi.org/10.1002/ecs2.3501. 

de Guzman, Mari-Len. "Safe passage using a ‘salmon cannon:' Unique transport solution helps migrating salmon overcome rock barriers." Hatchery International, 26 June 2025.

Lee, Jin Ho et al. Impact of profit margin on bioprocess optimization in commercial-scale aerobic fermenter design. Cell Reports Physical Science, Volume 6, Issue 6, 102628 doi: 10.1016/j.xcrp.2025.102628

Janampa-Sarmiento, P.C.; Reis, F.Y.T.; Egger, R.C.; de Pádua, S.B.; Marcelino, S.A.C.; Cunha, J.L.R.; Pierezan, F.; Figueiredo, H.C.P.; Tavares, G.C. First Report of Vibrio vulnificus Outbreak in Farm-Raised Sorubim (Pseudoplatystoma sp.) from Brazil. Fishes 2024, 9, 54. https://doi.org/10.3390/fishes9020054

Kane, Joseph W. and Singer, Anna. "Exploring and improving how state water funding flows amid a surge in federal infrastructure investment" Brookings, 5 December 2024.

Umer, Y.; Jetten, V.; Ettema, J.; Steeneveld, G.-J. Assessing the Impact of the Urban Landscape on Extreme Rainfall Characteristics Triggering Flood Hazards. Hydrology 2023, 10, 15. https://doi.org/10.3390/hydrology10010015

Ruiz Palomar, C.; García Álvaro, A.; Hermosilla, D.; Gonzalo Ibrahím, F.G.; Muñoz, R.; de Godos, I. Comparative Analysis of Livestock Wastewater Reuse Under Summer and Winter Conditions at a Scale-Down Microalgae Culture. Water 2025, 17, 1483. https://doi.org/10.3390/w17101483

Liberti, D.; Pinheiro, F.; Simões, B.; Varela, J.; Barreira, L. Beyond Bioremediation: The Untapped Potential of Microalgae in Wastewater Treatment. Water 2024, 16, 2710. https://doi.org/10.3390/w16192710

"New NOAA study says ocean acidification rising higher than safe limits." Hatchery International, 24 June 2025.

Lujan, Milthon. "How Smart Are Fish? New Method to Study Them Discovered." AquaHoy: Digital Magazine on Aquaculture, 12 May 2025.

Vila-Pouca, C., De Waele, H., Parsékian, A., Erroi, S., De Rooij, M., Labohm, E., Deacon, A., & Kotrschal, A. (2025). A novel apparatus for studying fish cognition in the wild. Methods in Ecology and Evolution, 16, 939–948. https://doi.org/10.1111/2041-210X.70002

 
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